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kaistsystemsbiology / DeepProZyme

DeepECtransformer
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Connection error #2

Closed wuke37 closed 9 months ago

wuke37 commented 9 months ago

ValueError Traceback (most recent call last)

in ----> 1 proteinDataset = DeepECDataset(data_X=input_seqs, data_Y=pseudo_labels, explainECs=explainECs, pred=True) 2 proteinDataloader = DataLoader(proteinDataset, batch_size=batch_size, shuffle=False) 3 4 y_pred, y_score = run_neural_net(model, proteinDataloader, pred_thrd, device=device) 5 failed_cases = save_dl_result(y_pred, y_score, input_ids, explainECs, output_dir+'/tmp') [~/project/DeepProZyme/deepec/data_loader.py](https://vscode-remote+ssh-002dremote-002b219-002e223-002e172-002e133.vscode-resource.vscode-cdn.net/home/wuke/project/DeepProZyme/~/project/DeepProZyme/deepec/data_loader.py) in __init__(self, data_X, data_Y, explainECs, tokenizer_name, max_length, pred) 8 class DeepECDataset(Dataset): 9 def __init__(self, data_X, data_Y, explainECs, tokenizer_name='Rostlab/prot_bert_bfd', max_length=1000, pred=False): ---> 10 self.tokenizer = AutoTokenizer.from_pretrained(tokenizer_name, do_lower_case=False) 11 self.max_length = max_length 12 self.data_X = data_X [~/anaconda3/envs/kcat_pre/lib/python3.7/site-packages/transformers/tokenization_auto.py](https://vscode-remote+ssh-002dremote-002b219-002e223-002e172-002e133.vscode-resource.vscode-cdn.net/home/wuke/project/DeepProZyme/~/anaconda3/envs/kcat_pre/lib/python3.7/site-packages/transformers/tokenization_auto.py) in from_pretrained(cls, pretrained_model_name_or_path, *inputs, **kwargs) 304 config = kwargs.pop("config", None) 305 if not isinstance(config, PretrainedConfig): --> 306 config = AutoConfig.from_pretrained(pretrained_model_name_or_path, **kwargs) 307 308 if "bert-base-japanese" in str(pretrained_model_name_or_path): [~/anaconda3/envs/kcat_pre/lib/python3.7/site-packages/transformers/configuration_auto.py](https://vscode-remote+ssh-002dremote-002b219-002e223-002e172-002e133.vscode-resource.vscode-cdn.net/home/wuke/project/DeepProZyme/~/anaconda3/envs/kcat_pre/lib/python3.7/site-packages/transformers/configuration_auto.py) in from_pretrained(cls, pretrained_model_name_or_path, **kwargs) 331 {'foo': False} ... -> 1125 "Connection error, and we cannot find the requested files in the cached path." 1126 " Please try again or make sure your Internet connection is on." 1127 ) ValueError: Connection error, and we cannot find the requested files in the cached path. Please try again or make sure your Internet connection is on. =.= sorry for this
YTYGdemc commented 5 months ago

The same error appears to me, have u solved the error ?