kaistsystemsbiology / DeepProZyme

DeepECtransformer
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Prediction Thresholds Calculation #7

Open dsaeedeh opened 3 months ago

dsaeedeh commented 3 months ago

Hello,

In the paper, it is mentioned that "Using the validation dataset, the optimal threshold for each EC number was searched that maximized the F1 score of the EC number." Could you please clarify on how you did search for each optimal threshold or refer to the piece of code doing this part ? Thanks,