snapatac2.tl.diff_test - Githubissues

kaizhang / SnapATAC2

Single-cell epigenomics analysis tools

https://kzhang.org/SnapATAC2/

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snapatac2.tl.diff_test #306

Open TingTingShao opened 4 months ago

TingTingShao commented 4 months ago

Hi,

I generated gene-activity matrix with function make_gene_matrix, could I please ask if the function snapatac2.tl.diff_test can be used to impute the differentially accessible genes?

Thanks, tingting

kaizhang commented 4 months ago

For gene level analysis, please use scanpy.

philmar1 commented 4 months ago

Hello,

Can you explain me what is the difference between diff_test and marker_regions functions ?

Thank you

Philippe