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kaizhang / Taiji

This project has been moved to:
https://github.com/Taiji-pipeline/Taiji
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Indexing part of the initialization! #1

Closed amin-saffari closed 7 years ago

amin-saffari commented 7 years ago

Hi Kai,

I was reading your code to have a better understanding of it! I was wondering to ask if starMkIndex, bwaMkIndex, rsemMkIndex functions are defined? If so where can I find their type signature? Thanks in advance and Cheers, Amin

kaizhang commented 7 years ago

These functions are imported from Bio.Pipeline.NGS which is defined here. Several additional packages were used in this project, including https://github.com/kaizhang/bioinformatics-toolkit, https://github.com/kaizhang/bio-experiments, and the workflow management backend https://github.com/kaizhang/SciFlow.

amin-saffari commented 7 years ago

Thanks!