Closed bbarad closed 4 years ago
@bbarad Thank you so much for trying to install PyCurv and for your fix! I have merged it now, sorry for the delay. I have not tried to install it with pip -e
, did it work well? I believe adding >= instead of == will not hurt for python setup.py install
.
I was able to install just fine! Still working on the surfaces I want to feed into the system, but everything works nicely with pip -e (I also wrote a setup.py script for that so I could manage it with pip... will add a pull request for that later.). It might also be worth updating the readme now that pyto is open source - I wrote to Dr. Lucic and he kindly redirected me here: https://github.com/vladanl/Pyto.
Great, I did not know yet that Pyto is on GitHub! I will update the Readme tomorrow, thanks for pointing this out. May I ask from which technique and sample do you have the surfaces, cryo-ET and membranes or something else?
CryoET of mammalian mitochondria in fibbed cells! Challenging due to lots of high curvature areas in the cristae, but hoping to quantify that some with the curvature calculations!
Oh yes, mitochondria must be very time consuming to segment! What are you using for the segmentation? Good luck and let me know whether you have any issues with the curvature calculations.
When trying to install with
pip -e
, I had to make this change to install with python 3.7.3. Not sure ifpython setup.py install
would have handled it better, but I suspect it would not hurt it.