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kalininalab / alphafold_non_docker

AlphaFold2 non-docker setup
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cuSolver error #22

Closed AnjaliSetiya closed 1 year ago

AnjaliSetiya commented 2 years ago

i was able to run alphafold on cpu successfully. but when i am trying to run the same on gpu i am getting the below error

Traceback (most recent call last): File "/home/ngayatri/alphafold/run_alphafold.py", line 310, in app.run(main) File "/home/ngayatri/miniconda3/envs/alphafold/lib/python3.8/site-packages/absl/app.py", line 312, in run _run_main(main, args) File "/home/ngayatri/miniconda3/envs/alphafold/lib/python3.8/site-packages/absl/app.py", line 258, in _run_main sys.exit(main(argv)) File "/home/ngayatri/alphafold/run_alphafold.py", line 284, in main predict_structure( File "/home/ngayatri/alphafold/run_alphafold.py", line 149, in predict_structure prediction_result = model_runner.predict(processed_feature_dict) File "/home/ngayatri/alphafold/alphafold/model/model.py", line 133, in predict result = self.apply(self.params, jax.random.PRNGKey(0), feat) File "/home/ngayatri/miniconda3/envs/alphafold/lib/python3.8/site-packages/jaxlib/cusolver.py", line 281, in syevd lwork, opaque = cusolver_kernels.build_syevj_descriptor( RuntimeError: cuSolver internal error

i have checked with cuda version also. it is present

thank you

sanjaysrikakulam commented 2 years ago

Hi @AnjaliSetiya

Please refer to this issue #15