Incorrect variable name

kalininalab / alphafold_non_docker

AlphaFold2 non-docker setup

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Incorrect variable name #24

Closed zappuf closed 2 years ago

zappuf commented 2 years ago

Please change Download MGnify database in download_db.sh to the following

# Download MGnify database
echo "Downloading MGnify database"
mgnify_filename="mgy_clusters_2018_12.fa.gz"
wget -P "$mgnify" "https://storage.googleapis.com/alphafold-databases/casp14_versions/${mgnify_filename}"
(cd "$mgnify" && gunzip "$mgnify/$mgnify_filename")

sanjaysrikakulam commented 2 years ago

Hi @zappuf

Thank you for pointing the issue, I made several changes in the last update and somehow missed it. Now I have updated and migrated everything to variable substitution.