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kalininalab / alphafold_non_docker

AlphaFold2 non-docker setup
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fasta_path syntax error #4

Closed ianandersonlol closed 2 years ago

ianandersonlol commented 3 years ago

I am recieving the following error when trying to run the example. Do you have nay idea? ./example/query.fasta is definitely a string. 

alphafold$ bash run_alphafold.sh -d ./alphafold_data/ -o ./dummy_test/ -m model_1 -f ./example/query.fasta -t 2021-07-27
  File "/home/user/alphafold/run_alphafold.py", line 96
    fasta_path: str,
              ^
SyntaxError: invalid syntax
sanjaysrikakulam commented 3 years ago

Hi @ianandersonlol

Sorry, I am unable to reproduce your error. I cloned the repo and ran the script, maybe use the absolute path instead of the relative path.

ianandersonlol commented 3 years ago

Thanks, I'll give it a try!