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kalininalab / alphafold_non_docker

AlphaFold2 non-docker setup
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alphafold.data.tools #42

Closed as7a5 closed 1 year ago

as7a5 commented 2 years ago

Hi After the installation I get error as:

Traceback (most recent call last): File "/gpfs/home/js12009/Projects/Projects/AlphaFold_TEST/AlphaFold_2_2_0/Basic/run_alphafold.py", line 31, in from alphafold.data import pipeline File "/gpfs/share/apps/miniconda3/gpu/4.9.2/envs/alphafold2.2/lib/python3.8/site-packages/alphafold/data/pipeline.py", line 26, in from alphafold.data import templates File "/gpfs/share/apps/miniconda3/gpu/4.9.2/envs/alphafold2.2/lib/python3.8/site-packages/alphafold/data/templates.py", line 31, in from alphafold.data.tools import kalign ModuleNotFoundError: No module named 'alphafold.data.tools'

is there a python or conda library I am missing in the installation? Previous steps: from alphafold.common import protein from alphafold.common import residue_constants seem to work.

sanjaysrikakulam commented 2 years ago

Hi @as7a5

Sorry for the delayed response. I am not sure how you have installed AF2, I do not see any such error by following the steps in the README of this repository.

Please make sure you have installed all dependencies as provided in the README and redownload the AF2 latest version and try to rerun and see if you still have the error.