Closed avilella closed 2 years ago
sanjaysrikakulam
commented
2 years ago Hi @avilella
Thank you! Please leave me your email id and I will send you the details.
The model names feature was dropped in version 2.1.1. To change the number of models AF2 suggests editing the MODEL_PRESETS dictionary located under alphafold/model/config.py. Please refer to these threads for more information.
Hope this helps!
avilella
commented
2 years ago Excellent, thank you.
Email me to my username followed by gmail.com.
On Sat, May 28, 2022 at 6:37 AM Sanjay Kumar Srikakulam < @.***> wrote:
Hi @avilella https://github.com/avilella
Thank you! Please leave me your email id and I will send you the details.
The model names feature was dropped in version 2.1.1 https://github.com/kalininalab/alphafold_non_docker#api-changes-between-v200-and-v211. To change the number of models AF2 suggests editing the MODEL_PRESETS dictionary located under alphafold/model/config.py. Please refer to these threads for more information.
- deepmind/alphafold#405 https://github.com/deepmind/alphafold/issues/405
- deepmind/alphafold#230 https://github.com/deepmind/alphafold/issues/230
Hope this helps!
— Reply to this email directly, view it on GitHub https://github.com/kalininalab/alphafold_non_docker/issues/44#issuecomment-1140179142, or unsubscribe https://github.com/notifications/unsubscribe-auth/AABGSN5WXBXCG7W5VUEYOMLVMGWJVANCNFSM5W4PCJXQ . You are receiving this because you were mentioned.Message ID: @.***>
sanjaysrikakulam
commented
2 years ago Thank you! :-)
Hi,
We are running the bash run_alphafold.sh script in our non-docker installation via this repo (thanks for the efforts, if you leave us a name, address and t-shirt size, we will send you a t-shirt!).
Question: in the older version of the bash script, I was able to specify "model_1" for AF to run only 1 of the 5 models. Can I do the same in v2.2.0? What name is model_4? Thanks in advance.