kalininalab / alphafold_non_docker

AlphaFold2 non-docker setup
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-p <use_precomputed_msas> flag not working #62

Closed gerdos closed 1 year ago

gerdos commented 1 year ago

I created a multimer prediction and run the very same prediction with the "-p true" flag expecting it to be fast using the precomputed MSAs but the running time is the same.

What am I doing wrong?

Old-Shatterhand commented 1 year ago

Hi @gerdos,

for me, this sounds like an issue related to alphafold and not related to the docker-free setup.

Have you checked the AlphaFold documentation for this? The definition of the -p option in the code might help (Link).

Best, Roman