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kalininalab / alphafold_non_docker

AlphaFold2 non-docker setup
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Stuck on install step: https://github.com/deepmind/alphafold/archive does not exist #73

Open bwllc opened 4 months ago

bwllc commented 4 months ago

Thanks to the devs for providing an Anaconda-based solution for AlphaFold! I have a lot of experience with Anaconda virtual environment management, but none with Docker.

Unfortunately, I am stuck on an install step in your README. It appears that the main AlphaFold repo has reorganized its folders and files. The URL https://github.com/deepmind/alphafold/archive does not exist, however, the parent URL https://github.com/deepmind/alphafold does.

Any advice is greatly appreciated. Thanks!

bwllc commented 4 months ago

I might be answering my own question... if someone knowledgeable would confirm my proposed solution, I would greatly appreciate it.

I found another repo, https://github.com/google-deepmind/alphafold. You can't go directly down the folder hierarchy that is implied by the URL, but the Releases folder in that repo has a link to the file Alphafold v2.3.1.tar.gz.

I think this might be the file referenced in the AlphaFold Non-Docker install instructions.

I know that there have been some problems with fraudulent repos on GitHub recently, so I would like to confirm the legitimacy of this repo. Thanks.