Looking for more options for subsampling

kalininalab / alphafold_non_docker

AlphaFold2 non-docker setup

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Looking for more options for subsampling #74

Open velocirraptor23 opened 5 months ago

velocirraptor23 commented 5 months ago

Hi,

I have just installed this version and I was wondering if you have tried to add the parameters that are avalible in colabfold. FOr instance max_seq1, extra_seq1 , recycling times, number of seeds, max_msa_depth etc. Do you think it is possible to do that with this version?

Best wishes

Cesar

Old-Shatterhand commented 5 months ago

Hi @velocirraptor23 ,

tbh, we haven't considered that yet. I'm not sure how much work it is, but if you wish, you can open a Pull Request to update our code.

velocirraptor23 commented 5 months ago

Thanks for your response, I will pull this in requests

Cesar