Closed pierrepeterlongo closed 1 year ago
Hi Pierre,
Thank you for using MetaProFi!
I ran a test with your config file and it works perfectly fine. Here is the config I tried
h: 1
k: 28
m: 30000000000
nproc: 32
max_memory: 500GiB
sequence_type: nucleotide
output_directory: /test/sanjay/test_data/
matrix_store_name: metaprofi_bfmatrix
index_store_name: metaprofi_index
The config values should not include the angular (<
, >
) parentheses.
BTW m
can be anything.
This was my test setup:
config.yml
file.Hope this helps.
Indeed, it works now, after copy-pasting your config. I do not understand what was wrong.
Anyway, thanks a lot for your time. Best, Pierre
Hello,
Thanks a lot for your work in Metaprofi.
I'm facing issues while parsing the yml file.
here it is:
(I've tried with ou without '<' '>' characters).
The output is
(note that I tried several distinct
m
values (factor or 8 or not)Am I doing something wrong?
Best, Pierre