Open tbenavi1 opened 2 weeks ago
Hello,
I ran the following command: Reindeer --index -f fof_unitigs.txt -o /scratch/rranallo-benavidez/bcalm/quick_out2 -t 42
This was the output:
############# REINDEER version 1.4.6 ############# Command line was: /REINDEER/Reindeer --index -f fof_unitigs.txt -o /scratch/rranallo-benavidez/bcalm/quick_out2 -t 42 Indexing k-mers... #Monotigs and index constuction... Partition created 2,512,390,070 kmers read 350.941 seconds. ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Monotigs computed, now regular indexing start 394.804 seconds. terminate called after throwing an instance of 'std::invalid_argument' what(): Error opening /scratch/rranallo-benavidez/bcalm/quick_out2/_blkmers851982 Aborted
I think this issue may be related to the fact that I am using 42 threads. When I lowered to 32 threads, it ran successfully.
Hello,
I ran the following command: Reindeer --index -f fof_unitigs.txt -o /scratch/rranallo-benavidez/bcalm/quick_out2 -t 42
This was the output:
I think this issue may be related to the fact that I am using 42 threads. When I lowered to 32 threads, it ran successfully.