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kamimrcht / REINDEER

REINDEER REad Index for abuNDancE quERy
GNU Affero General Public License v3.0
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Camille: what's this file? #3

Closed rchikhi closed 4 years ago

rchikhi commented 4 years ago

https://github.com/kamimrcht/REINDEER/blob/master/test/out_test/out_query_Reindeer0.out seems to contains a sample output for querying unitigs

>0 LN:i:31 KC:i:6130 km:f:6130.0   L:-:0:- L:-:507  6130    4693
>1 LN:i:31 KC:i:11 km:f:11.0   L:-:510:-  L:+:559:  11  4
..

whereas when I run the test query from the README (./Reindeer --query -q test/query_test.fa -l quick_out -o quick_query), output is about the reads:

>SRR10092187.4 HISEQ:815:HK2NNBCXY:1:1101:1131:209      *       *
>SRR10092187.5 HISEQ:815:HK2NNBCXY:1:1101:1242:212      *       *
>SRR10092187.6 HISEQ:815:HK2NNBCXY:1:1101:1224:213      33      2
kamimrcht commented 4 years ago

Those two files are unrelated. ./Reindeer --query -q test/query_test.fa -l quick_out -o quick_query is a toy example. The other file is used to test REINDEER, with test.sh.

rchikhi commented 4 years ago

ah I see, thanks!