Open Krannich479 opened 4 years ago
Hi @Krannich479 REINDEER needs to open numerous files, and it seems you are restricted to a certain number on the machine you're using. You should be able to modify the open file limit with ulimit -n (which resets the limit only for your current shell). Best. C
Hi, I get an error
no matter if I run Reindeer with reads or pre-computed unitigs.
The calls are
./Reindeer --index -f <path-to-my>/fof.txt --nocount --bcalm
or./Reindeer --index -f <path-to-my>/fof_unitigs.txt --nocount
respectively.Both input files contain a single line in the style of
/absolute/path/to/my/sequenes.fasta
Any ideas whats going on here?