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kanaverse / kana

Single cell analysis in the browser
https://kanaverse.org/kana/
MIT License
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TypeError: e is not an Object. (evaluating '"_bioconductor_SLICE"in e') #228

Closed suragnair closed 1 year ago

suragnair commented 1 year ago

Hi thanks for the cool tool. I'm getting TypeError: e is not an Object. (evaluating '"_bioconductor_SLICE"in e') when I try uploading the following h5ad from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE176206: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE176nnn/GSE176206/suppl/GSE176206%5Fmyo%5Fmsx1%2Eh5ad%2Egz

I gunzip-ed the file prior to loading. Thanks and let me know if you need more information.

jkanche commented 1 year ago

I think i know whats happening, for now until we push a fix if you remove the _scvi_* cell annotation columns (in the obs slot) from the h5ad, it would work.

suragnair commented 1 year ago

great it works now, thanks! However the UMAP doesn't load in Safari 16.5.1. I am able to get it to work in Edge however.

How long do you expect the fix to be live?

jkanche commented 1 year ago

also Kana works on firefox, chrome and its variants.

Safari does not support the latest web technologies we need to perform the analysis in the browser.