Interesting notes - Githubissues

kango2 / ausarg

This repository contains information and code for AusARG genome assemblies.

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Interesting notes #41

Closed kiratalreja3 closed 6 months ago

kiratalreja3 commented 1 year ago

Complete BUSCOs vs AuN as a assembly comparison metric

kiratalreja3 commented 1 year ago

the first graph looks quite useful (Chromosome-Level Genome Assembly of the Cape Cliff Lizard (Hemicordylus capensis) Henrique G. Leitão 1,, Genevieve Diedericks1,2, Chris Broeckhoven 1, Simon Baeckens1,3, and Hannes Svardal 1,4,)

kiratalreja3 commented 1 year ago

reference for MitoHiFi

kiratalreja3 commented 1 year ago

checking for contamination

kiratalreja3 commented 1 year ago

chromosome-level genome assembly and annotation of the desert horned lizard, Phrynosoma platyrhinos, provides insight into chromosomal rearrangements among reptiles Nazila Koochekian 1,*, Alfredo Ascanio 1, Keaka Farleigh 1, Daren C. Card 2,3, Drew R. Schield 4, Todd A. Castoe 5 and Tereza Jezkova 1

GC content and repeat element density varies between macro and microchromosomes

kiratalreja3 commented 1 year ago