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kantorlab
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hivmmer
Alignment and variant-calling pipeline for Illumina HIV sequences.
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hivmmer fails on report generation
#18
jpflorido
opened
1 year ago
3
How to use pre-packaged reference files with --ref
#17
mbyott
opened
2 years ago
1
Does hivmmer accept fastq.gz files as input?
#16
LilyYe98
opened
2 years ago
0
Instruction to build a pHMM reference
#15
jihe-liu
opened
4 years ago
0
access to aavf file
#14
jihe-liu
opened
4 years ago
0
Fix handling of deletions in consensus.py
#13
mhowison
opened
4 years ago
0
Reference enquiry
#12
nadine-zakkak
opened
4 years ago
1
Add minimum coverage threshold when calling consensus sequence
#11
mhowison
opened
4 years ago
0
improve consistency of whole genome coverage
#10
mhowison
closed
4 years ago
0
Reimplement hivmmer wrapper in Python to support whole genome
#9
mhowison
closed
4 years ago
1
Include prepackaged pHMMs for whole genome
#8
mhowison
closed
4 years ago
0
Determine optimal alignment score threshold
#7
mhowison
closed
5 years ago
0
Add QC stage for filtering on quality score and read length
#6
mhowison
closed
5 years ago
0
support for Gag?
#5
drescs
closed
4 years ago
2
What should I be using as a reference?
#4
drescs
closed
4 years ago
6
Subtype C
#3
roryk
closed
4 years ago
4
Validate hxb2 coordinates
#2
mhowison
closed
4 years ago
0
Report specific insertion codons
#1
mhowison
closed
5 years ago
0