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kapsakcj / nanoporeWorkflow

:dna: Shell scripts for working with bacterial isolate Nanopore sequence data on CDC servers
MIT License
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add $GENOME_LENGTH param #10

Open kapsakcj opened 4 years ago

kapsakcj commented 4 years ago

So we can allow Flye, filtlong, and others to adjust params based on user-supplied genome length

kapsakcj commented 4 years ago

Will need to think carefully about this, especially in regards to having organisms on the same sequencing run with differing genome lengths.

Might require that the user supplies a samples.tsv or something to match samples, barcode numbers, and estimated genome length