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kapsakcj / nanoporeWorkflow

:dna: Shell scripts for working with bacterial isolate Nanopore sequence data on CDC servers
MIT License
9 stars 3 forks source link

migrate to guppy 3.6.0 for basecalling #16

Closed kapsakcj closed 4 years ago

kapsakcj commented 4 years ago

This will be worth it, due to the accuracy increase in the high accuracy model.

New module name: guppy/3.6.0-gpu

More info: https://community.nanoporetech.com/posts/guppy-v3-6-0-release

kapsakcj commented 4 years ago

Seems that Guppy barcode trimming is still broken, and won't be implemented until the next release. See the nanopore community link above ^

"Hi Johannes Debler -- we had already started shipping this release when you put in your first post so the barcoding fix didn't make it in. It will come in the next release though. =)" -from Forrest Brennan

johannes commented 4 years ago

No idea what this is about, but I hope your problem will be fixed soon. (Seems you removed the highlight of my name after GitHub's mail wnet out :-D)

kapsakcj commented 4 years ago

Sorry about that! I was copying text from another location and accidentally tagged you.