Open kapsakcj opened 4 years ago
This is so someone can run the basecalling script and have it write out basecalled fast5 files, for upload to NCBI/SRA
Something like -u for upload:
-u
upload
run_basecall-w-gpu.sh -i fast5s/ -o outdir/ -k rapid -b y -f r941 -u yes
Need to look into&test if guppy can produce both basecalled fast5s and fastqs at the same time or not
ncbi prefers upload of demultiplexed fastqs, not fast5s. This may be unecessary....
This is so someone can run the basecalling script and have it write out basecalled fast5 files, for upload to NCBI/SRA
Something like
-u
forupload
: