Closed kapsakcj closed 3 years ago
Should be able to do something like this:
$ seq -w 1 24
01
02
03
04
05
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10
11
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24
or just a wildcard for barcodeDir in demux/barcode*/; do [...]
kit that Justin request support for: EXP-NBD114
I already have support in some local commits, but have not pushed them to master branch yet.
in workflows/workflow-after-gpu-basecalling.sh
the loop has been adjusted:
-for barcodeDir in ${OUTDIR}demux/barcode[0-12]*; do
+for barcodeDir in ${OUTDIR}demux/barcode{01..24}; do
need to make sure that Guppy commands use the config for the exp-nbd114 kit
and update guppy to latest version available via scicomp modules
Implemented in https://github.com/kapsakcj/nanoporeWorkflow/commit/01103076d82b2af315759fb87bdd0f9fe815874f
Need to double-check that Guppy params for barcode kit are correct before I close this issue
fix the for loop.