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kapsakcj / nanoporeWorkflow

:dna: Shell scripts for working with bacterial isolate Nanopore sequence data on CDC servers
MIT License
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upgrade to singularity 3.5.3? #26

Closed kapsakcj closed 4 years ago

kapsakcj commented 4 years ago

SciComp has installed Singularity 3.5.3 across all nodes in the cluster, in your $PATH by default. It's located at /usr/bin/singularity

Not sure if it's worth switching all the scripts to this version of singularity, but it's there if I need it.

kapsakcj commented 4 years ago

A module now exists for singularity 3.5.3. It would be good to test out upgrading to that version of singularity, and ensure that the images built using singularity 2.6.1 still work with singularity 3.5.3

kapsakcj commented 4 years ago

Done in https://github.com/kapsakcj/nanoporeWorkflow/commit/d2df4526fdffe49965a032e24a462c9d25e01f4a