kapsakcj / nanoporeWorkflow

:dna: Shell scripts for working with bacterial isolate Nanopore sequence data on CDC servers
MIT License
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add Tiptoft for plasmid prediction #27

Open kapsakcj opened 4 years ago

kapsakcj commented 4 years ago

add a script that runs tiptoft on the filtlong-filtered reads to screen for plasmid replicon genes.

NARST would appreciate this, as well as the NGS unit

Perhaps run via singularity image, since there is no module for tiptoft