kapsakcj / nanoporeWorkflow

:dna: Shell scripts for working with bacterial isolate Nanopore sequence data on CDC servers
MIT License
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upgrade to NanoPlot 1.32.0 #30

Closed kapsakcj closed 4 years ago

kapsakcj commented 4 years ago

Hit an error while running a sequencing_summary.txt file from r10 basecalling w/ guppy 4.0.11. Upgrading to NanoPlot 1.30.1 resolved the issue.

Docker image incoming.

kapsakcj commented 4 years ago

docker image built, need to ask SCBS to add it to their repository in /apps for use on the cluster

kapsakcj commented 4 years ago

Just requested SCBS to copy the new singularity image for NanoPlot 1.32.0 over to /apps

Will update the nanoplot script when that is completed

kapsakcj commented 4 years ago

Done in https://github.com/kapsakcj/nanoporeWorkflow/commit/f6e7fdbf583c0b5ecabc95b8b0941ecf675bbde0