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kapsakcj / nanoporeWorkflow

:dna: Shell scripts for working with bacterial isolate Nanopore sequence data on CDC servers
MIT License
9 stars 3 forks source link

racon polishing turn down scripts to use 16 max threads #37

Closed kapsakcj closed 3 years ago

kapsakcj commented 3 years ago

or tell qsub to request a hefty amount of ram....minimap2 keeps crashing when using 20-22 threads

kapsakcj commented 3 years ago

Turned the dials to the left. 2-16 threads requested via qsub instead of 2-24. Commit: https://github.com/kapsakcj/nanoporeWorkflow/commit/8646a1c9120d8572a36c3debfa9d95886d2c6eed