search

kapsakcj / nanoporeWorkflow

:dna: Shell scripts for working with bacterial isolate Nanopore sequence data on CDC servers
MIT License
9 stars 3 forks source link

add step to re-orient medaka asms to start with dnaA #39

Open kapsakcj opened 3 years ago

kapsakcj commented 3 years ago

Similar to how Unicycler rotates circular contigs.

perhaps use circlator?

https://github.com/sanger-pathogens/circlator/wiki/Task:-fixstart