Closed kapsakcj closed 5 years ago
Also write wrapper script so once Guppy-GPU basecalling is done, script runs qcat-->Flye-->Racon X4 --> Medaka
Also maybe add filtlong in there too?
No longer using qcat, since latest release of Guppy v3.2.2 now demultiplexes and trims barcodes. Flye and Racon modules added. Still need to adjust medaka script to take the output assembly of Racon
Also write wrapper script so once Guppy-GPU basecalling is done, script runs qcat-->Flye-->Racon X4 --> Medaka
Also maybe add filtlong in there too?