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kapsakcj / nanoporeWorkflow

:dna: Shell scripts for working with bacterial isolate Nanopore sequence data on CDC servers
MIT License
9 stars 3 forks source link

Workflow languages #40

Open lskatz opened 3 years ago

lskatz commented 3 years ago

Hi! Any chance you want to rework the shell wrapper into a workflow language? Thinking about WDL for Terra.bio things and/or Nextflow for other things like INNUENDO.

kapsakcj commented 3 years ago

I definitely want to do this, yes 👍 Nextflow would be my preferred option at the moment but WDL looks like a very attractive option as well. Just would take longer to get up and running.

Plus, I think I would need google cloud platform access to run on Terra?

lskatz commented 3 years ago

Correct, you need a Google Cloud billing account to access Terra