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kapsakcj / nanoporeWorkflow

:dna: Shell scripts for working with bacterial isolate Nanopore sequence data on CDC servers
MIT License
9 stars 3 forks source link

update README on basecalling #9

Closed kapsakcj closed 4 years ago

kapsakcj commented 4 years ago

command structure and flags have changed when running the gpu basecalling script.

Need to update README with USAGE and examples.

kapsakcj commented 4 years ago

This will be important for those cloning the repo. This avoids the git-lfs errors by ignoring the download of the test data stored by git-lfs

$ GIT_LFS_SKIP_SMUDGE=1 git clone https://github.com/lskatz/nanoporeWorkflow.git
kapsakcj commented 4 years ago

I will soon make a new release, and adjust the README to download scripts from the release, instead of cloning master branch. This avoids git-lfs issues as well 👍

kapsakcj commented 4 years ago

done in https://github.com/lskatz/nanoporeWorkflow/commit/feb1b4a51d2f33653a8ea35cddac0d96fbc74052