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karel-brinda / ococo

Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
https://arxiv.org/abs/1712.01146
MIT License
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Error message when several outputs are redirected to standard output #10

Closed karel-brinda closed 8 years ago

karel-brinda commented 8 years ago 
karel@optikarel:~/ococo$ ./ococo -i test.bam -f test.fa -m real-time -P - -V - > /dev/null
[ococo]: Ococo starting: ococo16 (16 bits per position, 3bits per nucleotide counter)
[ococo]: Initialing SAM/BAM reader.
[ococo]: Loading reference ('test.fa').
[ococo]: Opening VCF stream ('-').
[ococo]: Opening pileup stream ('-').
[ococo]: Starting the main loop.
[ococo]: Ococo successfully finished. Bye.
[ococo:error]: Pileup file could not be closed.