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karel-brinda / ococo

Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
https://arxiv.org/abs/1712.01146
MIT License
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Flag for exact coverage #15

Open karel-brinda opened 8 years ago

karel-brinda commented 8 years ago

Add a flag to VCF output saying whether the coverage at the position is exact.

Possible approachs:

  1. Bloom filters
  2. find some trick how to encode 1 supplementary bit into current cell for a single position

Request from @biorelated.