Ococo 0.1.2 - Githubissues

karel-brinda / ococo

Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.

https://arxiv.org/abs/1712.01146

MIT License

47 stars 3 forks source link

Closed karel-brinda closed 8 years ago

karel-brinda commented 8 years ago

Replace Boost by getopt
Don't use CMake
Add a manpage
Minor improvements
Improve help message
Add CPU measurements
Polish code (remove old debugging code, remove unused gtest, add clang-format configuration file, etc.)
Add hidden option for logging updates
Change default majority constant from 0.60 to 0.51

@closes #9