Closed karel-brinda closed 6 years ago
`$ /Users/karel/miniconda3/bin/conda create -y --name dymas -c bioconda python==3.4 snakemake==3.4.2 samtools git cmake gnuplot ococo numpy biopython pysam==0.8.4 edlib` Traceback (most recent call last): File "/Users/karel/miniconda3/lib/python3.5/site-packages/conda/exceptions.py", line 479, in conda_exception_handler return_value = func(*args, **kwargs) File "/Users/karel/miniconda3/lib/python3.5/site-packages/conda/cli/main.py", line 145, in _main exit_code = args.func(args, p) File "/Users/karel/miniconda3/lib/python3.5/site-packages/conda/cli/main_create.py", line 68, in execute install(args, parser, 'create') File "/Users/karel/miniconda3/lib/python3.5/site-packages/conda/cli/install.py", line 405, in install execute_actions(actions, index, verbose=not context.quiet) File "/Users/karel/miniconda3/lib/python3.5/site-packages/conda/plan.py", line 643, in execute_actions inst.execute_instructions(plan, index, verbose) File "/Users/karel/miniconda3/lib/python3.5/site-packages/conda/instructions.py", line 134, in execute_instructions cmd(state, arg) File "/Users/karel/miniconda3/lib/python3.5/site-packages/conda/instructions.py", line 78, in LINK_CMD link(state['prefix'], dist, lt, index=state['index']) File "/Users/karel/miniconda3/lib/python3.5/site-packages/conda/install.py", line 960, in link os.makedirs(dst_dir) File "/Users/karel/miniconda3/lib/python3.5/os.py", line 241, in makedirs mkdir(name, mode) FileExistsError: [Errno 17] File exists: '/Users/karel/miniconda3/envs/dymas/share/man/man1'
Fixed in conda recipes.