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karel-brinda / rnftools

RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
http://karel-brinda.github.io/rnftools
MIT License
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More definitions of correctly mapped reads #16

Open karel-brinda opened 9 years ago

karel-brinda commented 9 years ago

Add support for switching definition of correctly mapped read (parameter of the evaluation):

  1. at least one coordinate is within delta-limit
  2. both coordinates are within delta-limit
  3. at least one base is aligned correctly (more appropriate for local aligners)