Errors when Snakefile changed and old experiment directory kept

karel-brinda / rnftools

RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.

http://karel-brinda.github.io/rnftools

MIT License

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Errors when Snakefile changed and old experiment directory kept #41

Open karel-brinda opened 8 years ago

karel-brinda commented 8 years ago

Error in job 42 while creating output file mtb_reads.fq.
RuleException:
ValueError in line 36 of /usr/local/lib/python3.4/dist-packages/rnftools/mishmash/mishmash.snake:
Wrong read name '__000001__(01,01,R,001362565,000000000),(01,01,R,001362565,000000000)__[dwgsim,reads-in-tuple:2]/1'. Single end read should not contain '/'.

Solution: make all files produced files dependent on Snakefile.

karel-brinda commented 8 years ago

Safeguard: differentiate file names for SE and PE simulations.