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karel-brinda / rnftools

RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
http://karel-brinda.github.io/rnftools
MIT License
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Local variable 'single_reads_statistics' referenced before assignment #52

Open karel-brinda opened 8 years ago

karel-brinda commented 8 years ago

Dymas, 4bonacci experiment:

Error in job 99 while creating output file 3_evaluation.dyn/et/00000.et.gz.
RuleException:
UnboundLocalError in line 122 of /Users/karel/anaconda/envs/py34/lib/python3.4/site-packages/rnftools/lavender/lavender.snake:
local variable 'single_reads_statistics' referenced before assignment
  File "/Users/karel/anaconda/envs/py34/lib/python3.4/site-packages/rnftools/lavender/Bam.py", line 536, in create_et
  File "/Users/karel/anaconda/envs/py34/lib/python3.4/site-packages/rnftools/lavender/Bam.py", line 519, in es2et
karel-brinda commented 8 years ago

Reason: empty es file so conversion es => et fails.