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karel-brinda / rnftools

RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
http://karel-brinda.github.io/rnftools
MIT License
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program rnftools: argparse does not work #54

Closed karel-brinda closed 7 years ago

karel-brinda commented 7 years ago

In conda environment for Python 3.4, parsing with argparse does not work for rnftools. This line probably does not work: https://github.com/karel-brinda/rnftools/blob/98f40b37141243a6f4a60a42d85961c771fef494/rnftools/scripts.py#L771

karel-brinda commented 7 years ago

This value is not overwritten for subparsers: https://github.com/karel-brinda/rnftools/blob/98f40b37141243a6f4a60a42d85961c771fef494/rnftools/scripts.py#L807