Open ypradat opened 8 months ago
Hi @ypradat ! We don't support that endpoint yet (I believe it is a recent addition to endpoints in the cbioportal API). Currently we only support maf mutation files, copy number alterations and fusions.
I will keep this issue open and add this as a requested feature.
When I run the example on the docs you sent, I also get blank response, so may be worth reaching out to the cbioportal team regarding this specific data.
Thanks for your comments and suggestions!
Ok I see, that would be great thanks!
The thing is I am very puzzled by the fact that a previous R api client named cgdsr
(https://github.com/cBioPortal/cgdsr) was working just fine before they decided to change the API and deprecate this client.
Now I am trying to have a simple R function to get mRNA expression data dynamically via the API and am unable to do so.
Dear @karissawhiting ,
I am opening another issue as I have been unable to load mRNA expression profiles from cbioportal. I tried the following.
I check on the API documentation here https://www.cbioportal.org/api/swagger-ui/index.html#/mRNA%20Percentile and was very surprised to see that the example request for mrna, i.e https://www.cbioportal.org/api/molecular-profiles/acc_tcga_rna_seq_v2_mrna/mrna-percentile/fetch?sampleId=TCGA-OR-A5J2-01, returns nothing in the body.
Can you advise on the procedure to retrieve mRNA expression profiles?
My settings are as in #70 .
Best regards, Yoann Pradat