Check oncokbR results against oncokb-annotator file annotation

karissawhiting / oncokbR

Annotate mutation, copy number alteration and structural variant data in R using oncoKB Annotation API

http://www.karissawhiting.com/oncokbR/

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Check oncokbR results against oncokb-annotator file annotation #1

Closed karissawhiting closed 6 months ago

karissawhiting commented 2 years ago

Get some sample data from cbioportalR and run it through the oncokbR annotator as well as the oncokb-annotator file annotator (https://github.com/oncokb/oncokb-annotator ). Check that there are no discrepancies between the two.

We can pick a few project IDs in cbioportalR to test this out.