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karissawhiting / oncokbR

Annotate mutation, copy number alteration and structural variant data in R using oncoKB Annotation API
http://www.karissawhiting.com/oncokbR/
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Check SV processing #7

Closed karissawhiting closed 1 year ago

karissawhiting commented 2 years ago

Assume all structural variants are functions (this mirrors behavior in

https://github.com/oncokb/oncokb-annotator/blob/47e4a158ee843ead75445982532eb149db7f3106/AnnotatorCore.py#L1506)

sv <- sv %>% mutate(is_functional = "true")