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karkman / gff_parser

Parser to add external gene calls and functional annotation from Prokka to Anvi'o.
GNU General Public License v3.0
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Extending the external gene calls file with `call_type` information #5

Closed meren closed 4 years ago

meren commented 4 years ago

We recently added anvi'o external gene calls a new column, call_type. More information here:

http://merenlab.org/software/anvio/help/artifacts/external-gene-calls/

This PR updates gff_parser.py to report that column depending on the feature types found in the GFF file.

karkman commented 4 years ago

Thank you @meren for fixing this!