kartoza / WBR-SEMP

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19.5 Species list #60

Closed gubuntu closed 4 years ago

gubuntu commented 4 years ago

Provide a list of important species occurring within the proposed biosphere reserve, including common names, wherever possible

ref biosphere_reserve_nomination_form_2013_en.pdf

zacharlie commented 4 years ago

The form request is Provide a list of important species occurring within the proposed biosphere reserve, including common names, wherever possible., however additional information may be required for #54

Spatial data and IUCN Red List Categories and Criteria (which are used by SANBI) are available from the https://www.iucnredlist.org but the license is restricted for commercial activity.

The data is available from http://redlist.sanbi.org/redcat.php but it is not in a data format that may be easily cross referenced.

This is also only for threatened species and does not give an indication of other endemic or important species.

Species of importance data for birding is detailed from the important bird areas web data. The original data links:

were not available and had to be manually sourced, which resulted in the following pages:

Whilst these pages offer some information on species they do not supply full citations and rely on a "Further Reading" section.

Species of importance must be manually extracted from each page and added into a suitable data format.

Additional information on important species is listed on the UNESCO website https://en.unesco.org/biosphere/africa/waterberg, however this does not seem to give any indication of where that data was sourced.

A copy of the Waterberg District Bioregional Plan Draft 20160201 was sourced in PDF format which contains details on particular species of concern, however the information does not contain specific citation and the document references do not make any explicit mention of species data.

Additional Biome information data is available from NBA2018_Terrestrial_ThreatStatus_ProtectionLevel, however it is not species specific to a specific region within the area of interest and simply contains vegetation/ biome types which usually support a range of species, e.g. Springbokvlakte Thornveld. It does, however, give an indication of endemic biome type.

Species of critical importance may be derived from the NATIONAL ENVIRONMENTAL MANAGEMENT: BIODIVERSITY ACT and a 2007 Gazetted list of CRITICALLY ENDANGERED, ENDANGERED, VULNERABLE AND PROTECTED SPECIES is available from www.speciesstatus.sanbi.org/pdf/NEMBAToPslist23Feb.pdf

A complete list of species occurrences was sourced for South Africa from the Global Biodiversity Information Facility data base.

This occurrence data does not provide information on the importance of the species.

The resulting list provides 10390 distinct species values, with 9260 passing some elementary integrity checks and 1130 records indicating invalid values or conventions. No common names are available from this data.

The raw data list is available from species_list.csv

This is a comprehensive list of species observations, and does not directly serve the purposes of this species list but may serve to provide additional analysis and reference functions. As the sources listed above provide little data which is overtly available to support their claims, it may prove to be a useful resource. It has been provisionally committed to the git repository for the sake of posterity, however a refined list of greatly reduced scope will replace it and is currently in development.

The citation data for these GBIF observations is as follows:

Citation: GBIF.org (08 October 2020) GBIF Occurrence Download https://doi.org/10.15468/dl.zyvv6f
License: Unspecified

INCLUDES RECORDS FROM 1,425 DATASETS

The resulting records for the entire search (~28000000), were processed into spatial positions. The full processing outline is available from my personal repository under gbif_simple_sql.md.

It is possible that additional analysis may be performed by cross referencing these data sources or by running spatial analysis on occurrence data for particular species of interest where relevant.

Species data will need to be prioritised and consolidated appropriately. A species list template is available from SANBI, however it does not seem very well suited to the data inputs available and may require a significant amount of additional work to format available data into this format.

zacharlie commented 4 years ago

Localised resources were taken from relevant listed sources and captured into a suitable data format, and local occurrences of a species were obtained using the derived gbif data and cross referencing it against lists of species convcern which occur at a national level, such as NEMBA.

An additional resource was obtained from the SANBI POSA which supplied a sensitive species list for flora spicies of national significance in South Africa.

A 2011 LIST OF ECOSYSTEMS THAT ARE THREATENED AND IN NEED OF PROTECTION as outlined by the NATIONAL ENVIRONMENTAL MANAGEMENT: BIODIVERSITY ACT was also obained, however it was not in a suitable format for inclusion in this report and will require additional resource allocation to verify the special concern species for the study area.

zacharlie commented 4 years ago

Data available from #80

Species status was not always well defined in the source data and a number of synonyms were used, however these introduce some ambiguity as to the exact status of threat of a species or it's protections. As such, the status details were summarised into the following categories, in descending priority.

ENDANGERED - Species listed as endangered by source or listed on the Red List (according to UNESCO) or NEMBA protected species list data. THREATENED - Species listed as threatened. SENSITIVE - Species on the POSA sensitive species list (flora only). VULNERABLE - Species listed as threatened. TRIGGER - Species with other categorisations. These are trigger species for conservation action and may be regionally threatened, endemic, protected or otherwise significant (such as rare, biome restricted or congregatory species) within the context of the current study area.

As a result, this list does not comprehensively or accurately outline the current threat level for any of the species listed and does not properly distinguish between threatened, critically endangered or recovering species. As a general rule, endangered species are of national importance or populations are at critical levels, threatened species are internationally threatened, and vulnerable are of regional importance or threatened locally. This is a general guideline and is NOT a rule, as inaccuracies are expected to be present within this dataset.

Where duplicated records were identified, a single result was retained with the highest priority status assigned. Where the category or family of a species was not defined, it was surmised from the available resources and consolidated to match the categories outlined in the NEMBA list.

The complete data has been included in spread sheet format. Note that significant manual error correction, such as grammatical or clerical errors, in any of the source done was done in an ad hoc manner and was not comprehensive. Note as well that certain species are elusive, and lack of an occurence within the obtained data does not necessarily indicate that an area of interest or biome is not of significance to contributions for the conservation efforts of the species.

The result of this assessment yielded a total number of 188 distinct species of significance within the study area exent.

Summary

STATUS No of Species
ENDANGERED 24
THREATENED 23
SENSITIVE 11
VULNERABLE 37
TRIGGER 93
Category No of Species
AMPHIBIA 2
AVES 89
FLORA 41
INVERTEBRATA 2
MAMMALIA 33
PISCES 1
REPTILIA 20

Species List

Status Category Scientific Name Common Name
TRIGGER FLORA acacia
VULNERABLE MAMMALIA acinonyx jubatus cheetah
TRIGGER REPTILIA afroedura langi lowveld flat gecko
TRIGGER AVES alcedo semitorquata half-collared kingfisher
TRIGGER REPTILIA amblyodipsas concolor natal purple-glossed snake
TRIGGER REPTILIA amblyodipsas concolor natal purple-glossed snake
TRIGGER REPTILIA amblyodipsas ventrimaculata kalahari purple-glossed snake
VULNERABLE MAMMALIA amblysomus julianae juliana’s golden mole
SENSITIVE FLORA ansellia africana
THREATENED AVES anthropoides paradiseus blue crane
TRIGGER AVES anthus lineiventris striped pipit
VULNERABLE AVES aquila rapax tawny eagle
TRIGGER AVES aquila spilogaster african hawk eagle
TRIGGER AVES aquila verreauxii verreauxs’ eagle
TRIGGER AVES ardeola ralloides squacco heron
THREATENED AVES ardeotis kori kori bustard
TRIGGER REPTILIA aspidelaps scutatus shield-nosed snake
TRIGGER MAMMALIA atelerix frontalis southern african hedgehog
TRIGGER REPTILIA atractaspis duerdeni duerden’s burrowing asp
ENDANGERED AVES botaurus stellaris bittern
VULNERABLE FLORA bowiea volubilis
VULNERABLE FLORA brachycorythis conica
ENDANGERED FLORA brachystelma gerrardii
TRIGGER AVES bradornis mariquensis marico flycatcher
TRIGGER REPTILIA bradypodion taeniabronchum smith’s dwarf chameleon
TRIGGER AVES bubo capensis cape eagle-owl
THREATENED AVES bucorvus leadbeateri southern ground-hornbill
TRIGGER AVES buteo rufofuscus jackal buzzard
TRIGGER AVES c. pectoralis black-chested snake eagle
TRIGGER AVES calamonastes fasciolatus barred wren-warbler
TRIGGER AVES campicoloides bifasciata buff-streaked chat
THREATENED MAMMALIA ceratotherium simum white rhinoceros
VULNERABLE FLORA ceropegia stentiae
VULNERABLE AVES ciconia nigra black stork
TRIGGER AVES cinnyris talatala white-bellied sunbird
TRIGGER AVES circaetus cinereus brown snake eagle
TRIGGER AVES circus ranivorus african marsh harrier
SENSITIVE FLORA clivia miniata
ENDANGERED MAMMALIA cloeotis percivali short-eared trident bat
TRIGGER MAMMALIA connochaetes gnou black wildebeest
THREATENED AVES coracias garrulus european roller
VULNERABLE FLORA corchorus psammophilus
TRIGGER REPTILIA cordylus breyeri waterberg girdled lizard
TRIGGER AVES cossypha humeralis white-throated robin-chat
TRIGGER AVES crex crex corn crake
VULNERABLE MAMMALIA cricetomys gambianus giant rat
ENDANGERED REPTILIA crocodylus niloticus nile crocodile
TRIGGER MAMMALIA crocuta crocuta spotted hyaena
SENSITIVE FLORA cryptocarya transvaalensis
VULNERABLE FLORA cucumis humifructus
VULNERABLE FLORA cullen holubii
SENSITIVE FLORA curtisia dentata
SENSITIVE FLORA cyphostemma hardyi
ENDANGERED MAMMALIA damaliscus lunatus tsessebe
ENDANGERED FLORA delosperma macellum
TRIGGER AVES dendrocygna viduata white-face whistling duck
ENDANGERED MAMMALIA diceros bicornis black rhinoceros
TRIGGER FLORA digitaria eriantha
SENSITIVE FLORA dioscorea sylvatica
SENSITIVE FLORA drimia sanguinea
TRIGGER AVES egretta alba great egret
TRIGGER AVES egretta garzetta little egret
TRIGGER AVES egretta intermedia yellow-billed egret
TRIGGER AVES egretta vinaceigula slaty egret
SENSITIVE FLORA elaeodendron transvaalense
VULNERABLE FLORA elytrophorus globularis
ENDANGERED FLORA encephalartos eugene-maraisii waterberg cycad
TRIGGER FLORA encephalartos transvenosus modjadje cycad
ENDANGERED AVES ephippiorhynchus senegalensis saddle-billed stork
TRIGGER FLORA eragrostis pallens
TRIGGER AVES eremomela usticollis burnt-necked eremomela
THREATENED INVERTEBRATA eriksonia acraeina butterfly species
TRIGGER FLORA erythrophysa transvaalensis
TRIGGER AVES erythropygia paena kalahari scrub robin
TRIGGER AVES erythropygia paena kalahari scrub robin
TRIGGER AVES estrilda erythronotos black-faced waxbill
VULNERABLE FLORA eulophia coddii
ENDANGERED FLORA euphorbia clivicola
SENSITIVE FLORA euphorbia groenewaldii
VULNERABLE AVES eupodotis caerulescens blue korhaan
TRIGGER AVES eupodotis senegalensis white-bellied korhaan
TRIGGER AVES eurocephalus anguitimens southern white-crowned shrike
TRIGGER AVES falco biarmicus lanner falcon
VULNERABLE AVES falco naumanni lesser kestrel
VULNERABLE AVES falco peregrinus peregrine falcon
THREATENED MAMMALIA felis lybica african wildcat
TRIGGER MAMMALIA felis nigripes black-footed cat
TRIGGER AVES gallinago nigripennis african snipe
TRIGGER AVES gallinula angulata lesser moorhen
ENDANGERED FLORA gasteria disticha
VULNERABLE AVES geronticus calvus bald ibis
TRIGGER AVES glareola nordmanni black-winged pratincole
ENDANGERED AVES gorsachius leuconotus white-backed night heron
ENDANGERED AVES gyps africanus white-backed vulture
ENDANGERED AVES gyps coprotheres cape vulture
TRIGGER INVERTEBRATA haliotis midae south african abalone
TRIGGER FLORA harpagophytum procumbens devil’s claw
SENSITIVE FLORA haworthia lockwoodii
TRIGGER AVES hieraaetus wahlbergi wahlberg’s eagle
VULNERABLE MAMMALIA hippopotamus amphibious hippopotamus
THREATENED MAMMALIA hippotragus equinus roan antelope
VULNERABLE MAMMALIA hippotragus niger sable antelope
THREATENED REPTILIA homopholis mulleri muller’s velvet gecko
TRIGGER AVES ixobrychus minutus little bittern
TRIGGER AVES ixobrychus sturmii dwarf bittern
VULNERABLE FLORA jamesbrittenia bergae
TRIGGER AVES kurrichane thrush turdus libonyanus
VULNERABLE MAMMALIA laephotis botswanae botswana long-eared bat
TRIGGER AVES lamprotornis australis burchell’s starling
TRIGGER AVES laniarius atrococcineus crimson-breasted shrike
VULNERABLE FLORA ledebouria atrobrunnea
TRIGGER MAMMALIA leptailurus serval serval
TRIGGER AVES leptoptilos crumeniferus marabou stork
TRIGGER AVES lophotis ruficrista red-crested korhaan
VULNERABLE MAMMALIA loxodonta africana african elephant
ENDANGERED MAMMALIA lycaon pictus african wild dog
SENSITIVE FLORA lydenburgia cassinoides
TRIGGER REPTILIA lygodactylus waterbergensis waterberg dwarf gecko
VULNERABLE MAMMALIA manis temminckii pangolin
VULNERABLE FLORA marsilea farinosa
THREATENED MAMMALIA mellivora capensis honey badger
TRIGGER AVES mirafra passerina monotonous lark
TRIGGER AVES monticola rupestris cape rock thrush
TRIGGER AVES motacilla clara mountain wagtail
TRIGGER AVES mycteria ibis yellow-billed stork
THREATENED AVES neotis denhami denham’s bustard
VULNERABLE AVES neotis ludwigii ludwig’s bustard
TRIGGER AVES netta erythrophthalma southern pochard
TRIGGER AVES nycticorax nycticorax black-crowned night heron
ENDANGERED FLORA orbea elegans
ENDANGERED MAMMALIA orycteropus afer aardvark
VULNERABLE FLORA oryza longistaminata
TRIGGER REPTILIA p. guttatus dwarf flat lizard
TRIGGER REPTILIA p. relictus relict flat lizard
THREATENED MAMMALIA panthera leo lion
THREATENED MAMMALIA panthera pardus leopard
THREATENED MAMMALIA paracynictis selousi selous mongoose
ENDANGERED MAMMALIA parahyaena brunnea brown hyaena
TRIGGER FLORA paspalidium germinatum
TRIGGER AVES passer motitensis great sparrow
ENDANGERED AVES pelecanus rufescens pink - backed pelican
THREATENED MAMMALIA pipistrellus kuhliisubtilis kuhl’s bat
TRIGGER AVES platalea alba african spoonbill
TRIGGER REPTILIA platysaurus minor waterberg flat lizard
TRIGGER AVES plectropterus gambensis spur-winged goose
VULNERABLE AVES podica senegalensis african finfoot
THREATENED MAMMALIA poecilogale albinucha african striped weasel
ENDANGERED AVES poicephalus robustus cape parrot
THREATENED AVES polemaetus bellicosus martial eagle
TRIGGER AVES polyboroides typus african harrier-hawk
TRIGGER AVES porphyrio alleni allen’s gallinule
TRIGGER AVES porzana pusilla baillon’s crake
TRIGGER AVES promerops gurneyi gurney’s sugarbird
TRIGGER REPTILIA prosymna bivittata two-striped shovel-snout
TRIGGER FLORA protea roupelliae
THREATENED MAMMALIA proteles cristatus aardwolf
VULNERABLE FLORA prunus africana
TRIGGER REPTILIA psammobates oculiferus kalahari tent tortoise
THREATENED REPTILIA psammophis jallae jalla’s sand snake
TRIGGER REPTILIA pseudocordylus transvaalensis northern crag lizard
VULNERABLE AVES pterocles gutturalis yellow-throated sandgrouse
ENDANGERED REPTILIA python sebae natalensis african rock python
THREATENED AMPHIBIA pyxicephalus adspersus giant bullfrog
TRIGGER AMPHIBIA pyxicephalus edulis african bullfrog
TRIGGER MAMMALIA redunca arundinum reedbuck
VULNERABLE MAMMALIA rhinolophus blasii peak-saddle horseshoe bat
VULNERABLE AVES rostratula benghalensis greater painted-snipe
THREATENED AVES sagittarius serpentarius secretarybird
TRIGGER AVES sarothrura boehmi streaky-breasted flufftail
VULNERABLE FLORA sartidia jucunda
ENDANGERED AVES scotopelia peli pel’s fishing owl
VULNERABLE PISCES serranochromis meridianus lowveld largemouth
TRIGGER AVES sporopipes squamifrons scaly-feathered finch
THREATENED MAMMALIA suncus linex greater dwarf shrew
THREATENED MAMMALIA syncerus caffer african buffalo
VULNERABLE AVES terathopius ecaudatus bateleur
TRIGGER AVES thalassornis leuconotus white-backed duck
ENDANGERED AVES torgos tracheliotus lappet-faced vulture
VULNERABLE AVES trigonoceps occipitalis white-headed vulture
TRIGGER AVES turdoides bicolor southern pied babbler
TRIGGER AVES turdus libonyanus kurrichane thrush
VULNERABLE AVES tyto capensis african grass owl
TRIGGER AVES uraeginthus granatinus violet-eared waxbill
TRIGGER FLORA vachellia
TRIGGER AVES vidua regia shaft-tailed whydah
ENDANGERED FLORA warburgia salutaris pepper-bark tree
TRIGGER REPTILIA zygaspis vandami van dam’s round-headed worm lizard