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kasperdanielhansen / genbioconductor

Materials for Genomics Data Science: Introduction to Bioconductor
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rtracklayer: openssl dependency version is hardcoded #16

Open ScottNortonPhD opened 4 years ago

ScottNortonPhD commented 4 years ago

System: Mac OS Catalina with Homebrew

How to reproduce:

$ brew install openssl  # as of 20 Apr 2020, installs openssl@1.1
$ R
> BiocManager::install("rtracklayer")

Expectation: the package will link against the latest available version of /usr/local/opt/openssl/lib/libssl.*-dylib. Actual behavior: the package will link against /usr/local/opt/openssl/lib/libssl.1.0.0-dylib, even though libssl.1.1.dylib exists while libssl.1.0.0.dylib does not. Installation fails when loading from temporary location.

ScottNortonPhD commented 4 years ago

A temporary workaround is described in kelaberetiv/TagUI#635.