I tried to execute qc_report function for a single zip archive within my user's directory,
but I have met a Error msg like below
List of 3
$ fig.width : num 4
$ fig.height: num 3.5
$ fig.align : chr "center"
|.................................................................. | 94%
ordinary text without R code
|.................................................................... | 97%
label: kmer-content (with options)
List of 3
$ fig.width : num 4
$ fig.height: num 3.5
$ fig.align : chr "center"
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: qc_report ... element_text -> .handleSimpleError -> h -> cat -> file
In addition: Warning messages:
1: Missing column names filled in: 'X1' [1]
2: In file(file, ifelse(append, "a", "w")) :
cannot open file 'sample-report.knit.md': Permission denied
Execution halted
It says "permission problem"
I could not find where above messages produced from yet.
but when I tried to run as root. "Permission denied" message is disappeared.
I guess that there is invalid setting related on knitr.
How can we resolve this problem?
I am using fastqcr with R 4.1.0.
I tried to execute qc_report function for a single zip archive within my user's directory, but I have met a Error msg like below
It says "permission problem" I could not find where above messages produced from yet. but when I tried to run as root. "Permission denied" message is disappeared.
I guess that there is invalid setting related on knitr. How can we resolve this problem?