sh: 1: fastqc: not found

kassambara / fastqcr

fastqcr: Quality Control of Sequencing Data

http://www.sthda.com/english/rpkgs/fastqcr

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sh: 1: fastqc: not found #8

Closed PamelaMehanna closed 6 years ago

PamelaMehanna commented 6 years ago

Hi,

I successfully installed the fastqcr package on R/3.3.3, both locally and on a cluster. I load the library and then when I try to use the first command: fastqc(fq.dir = "/home/user/test_fastq", qc.dir = "/home/user/test_fastq/fastqc", threads = 4) it outputs this error immediately: sh: 1: fastqc: not found

What am I doing wrong? I tried doing fastqc_install(), but that didn't change anything..

Thank you for your help.

shengyongniu commented 6 years ago

I have the same problem. Do you solve it? Thanks!

Simon