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kassambara / fastqcr

fastqcr: Quality Control of Sequencing Data
http://www.sthda.com/english/rpkgs/fastqcr
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sh: 1: fastqc: not found #9

Closed shengyongniu closed 5 years ago

shengyongniu commented 6 years ago

Hi there,

I installed the fastqcr package on R 3.4.4 locally. I run the command fastqc_install() successfully and tried: fastqc(fq.dir = "/home/user/test_fastq", qc.dir = "/home/user/fastqc", threads = 1) but I got the following error: sh: 1: fastqc: not found

What should I do? Thanks!

Simnon

palfalvi commented 6 years ago

Try to move fastqc to /bin/ or ~/bin/ or add the installation directory to your $PATH.