Survival rate and cumulative hazard function plotting

Expected behavior

While plotting adjusted survival curves using "ggadjustedcurves" and adding the argument fun = "cumhaz", the curve should always go up at it is plotting the cumulative hazard function (f(y) = -log(y)).

Actual behavior

However, with or without the fun = "cumhaz" argument, the adjusted survival curves are showing the survival rates, which is going downwards.

Steps to reproduce the problem

ggadjustedcurves(fit2, data = bladder, method = "conditional", variable = "rx") curve <- surv_adjustedcurves(fit2, data = bladder, method = "conditional", variable = "rx")

ggadjustedcurves(fit2, data = bladder, method = "conditional", variable = "rx") curve <- surv_adjustedcurves(fit2, data = bladder, method = "conditional", fun = "cumhaz", variable = "rx")

Both of these curves are the same.

`session_info()`

Session info --------------------------------------------------------------------------------------------------

version R version 4.0.2 (2020-06-22) os Windows 10 x64
system x86_64, mingw32
ui RStudio
language (EN)
collate English_United States.1252
ctype English_United States.1252
tz America/Chicago
date 2020-10-01

Packages ------------------------------------------------------------------------------------------------------ ! package version date lib source
abind 1.4-5 2016-07-21 [1] CRAN (R 4.0.0)
arm 1.11-2 2020-07-27 [1] CRAN (R 4.0.2)
assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.0.0)
backports 1.1.8 2020-06-17 [1] CRAN (R 4.0.2)
base64enc 0.1-3 2015-07-28 [1] CRAN (R 4.0.0)
bayesplot 1.7.2 2020-05-28 [1] CRAN (R 4.0.2)
bayestestR 0.7.2 2020-07-20 [1] CRAN (R 4.0.2)
blob 1.2.1 2020-01-20 [1] CRAN (R 4.0.0)
boot 1.3-25 2020-04-26 [1] CRAN (R 4.0.0)
bridgesampling 1.0-0 2020-02-26 [1] CRAN (R 4.0.0)
brms 2.13.5 2020-07-31 [1] CRAN (R 4.0.2)
Brobdingnag 1.2-6 2018-08-13 [1] CRAN (R 4.0.0)
broom 0.7.0 2020-07-09 [1] CRAN (R 4.0.2)
callr 3.4.4 2020-09-07 [1] CRAN (R 4.0.2)
car 3.0-9 2020-08-11 [1] CRAN (R 4.0.2)
carData 3.0-4 2020-05-22 [1] CRAN (R 4.0.0)
cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.0.0)
checkmate 2.0.0 2020-02-06 [1] CRAN (R 4.0.0)
chron 2.3-56 2020-08-18 [1] CRAN (R 4.0.2)
cli 2.0.2 2020-02-28 [1] CRAN (R 4.0.0)
cluster 2.1.0 2019-06-19 [2] CRAN (R 4.0.2)
cmprsk 2.2-10 2020-06-09 [1] CRAN (R 4.0.0)
coda 0.19-3 2019-07-05 [1] CRAN (R 4.0.0)
codetools 0.2-16 2018-12-24 [2] CRAN (R 4.0.2)
colorspace 1.4-1 2019-03-18 [1] CRAN (R 4.0.0)
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crayon 1.3.4 2017-09-16 [1] CRAN (R 4.0.0)
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curl 4.3 2019-12-02 [1] CRAN (R 4.0.0)
data.table 1.12.8 2019-12-09 [1] CRAN (R 4.0.0)
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dbplyr 1.4.4 2020-05-27 [1] CRAN (R 4.0.0)
desc 1.2.0 2018-05-01 [1] CRAN (R 4.0.0)
devtools 2.3.2 2020-09-18 [1] CRAN (R 4.0.2)
digest 0.6.25 2020-02-23 [1] CRAN (R 4.0.0)
dplyr 1.0.0 2020-05-29 [1] CRAN (R 4.0.2)
DT 0.15 2020-08-05 [1] CRAN (R 4.0.2)
dygraphs 1.1.1.6 2018-07-11 [1] CRAN (R 4.0.0)
effects 4.2-0 2020-08-11 [1] CRAN (R 4.0.2)
effectsize 0.3.3 2020-09-17 [1] CRAN (R 4.0.2)
ellipsis 0.3.1 2020-05-15 [1] CRAN (R 4.0.0)
emmeans 1.5.1 2020-09-18 [1] CRAN (R 4.0.2)
estimability 1.3 2018-02-11 [1] CRAN (R 4.0.0)
evaluate 0.14 2019-05-28 [1] CRAN (R 4.0.0)
fansi 0.4.1 2020-01-08 [1] CRAN (R 4.0.0)
farver 2.0.3 2020-01-16 [1] CRAN (R 4.0.0)
fastmap 1.0.1 2019-10-08 [1] CRAN (R 4.0.0)
forcats 0.5.0 2020-03-01 [1] CRAN (R 4.0.0)
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Formula 1.2-3 2018-05-03 [1] CRAN (R 4.0.0)
fs 1.5.0 2020-07-31 [1] CRAN (R 4.0.2)
generics 0.0.2 2018-11-29 [1] CRAN (R 4.0.0)
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ggplot2 3.3.2 2020-06-19 [1] CRAN (R 4.0.2)
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gtools 3.8.2 2020-03-31 [1] CRAN (R 4.0.0)
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[1] C:/Users/munta/Documents/R/win-library/4.0 [2] C:/Program Files/R/R-4.0.2/library

D -- DLL MD5 mismatch, broken installation.

kassambara / survminer